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Retrieve cell populations found using Annotation.

Source: R/RetrievePops.r
RetrievePops.Rd

Retrieve cell populations found using Annotation.

Usage

RetrievePops(AnnotationObj, phenotypes)

Arguments

AnnotationObj

An object of class Annotation.

phenotypes

A list containing at least one element of class matrix describing a sought phenotype. Each matrix should have two columns where the name of a used marker is associated to a value chosen between 0, 1 and 2. 0 translates to -, 1 to + and 2 to ++.

Value

A list of two elements.

  • phenotypesinfo A list containing informations about sought populations.

  • Mergedleaves The partitioning of the set of n cells with potentially merged leaves.

Author

Chariff Alkhassim, Boris Hejblum