Function reference • cytometree

All functions

Annotation(): Annotates cell populations found using CytomeTree.

CytofTree(): Binary tree algorithm for mass cytometry data analysis.

CytomeTree(): Binary tree algorithm for cytometry data analysis.

DLBCL: Diffuse large B-cell lymphoma data set from the FlowCAP-I challenge.

FmeasureC(): C++ implementation of the F-measure computation

FmeasureC_no0(): C++ implementation of the F-measure computation without the reference class labeled "0"

HIPC: HIPC T cell panel data set from HIPC program, patient 1369. The data was analyzed and gated by Stanford.

IMdata: Influenza vaccine response dataset

RetrievePops(): Retrieve cell populations found using Annotation.

bootstrapCI(): Bootstrapped Confidence Interval.

cytometree cytometree-package: cytometree: Automated Cytometry Gating and Annotation

plot_cytopop(): Plot the cell count for each population using CytomeTree.

plot_graph(): Plot the binary tree built using CytomeTree.

plot_nodes(): Plot the distribution of the observed cells at each node of the binary tree built using CytomeTree.