Function reference
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TcGSA-package - Time-course Gene Set Analysis
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TcGSA.LR()print(<TcGSA>) - Computing the Likelihood Ratios for the Gene Sets under Scrutiny
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TcGSA.LR.parallel() - Parallel computing the Likelihood Ratios for the Gene Sets under Scrutiny
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rchisqmix()dchisqmix()qchisqmix()pchisqmix() - Chi-Squared Mixtures Distribution
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clustTrend()print(<ClusteredTrends>)plot(<ClusteredTrends>) - Cluster the genes dynamics into different dominant trends.
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data_simu_TcGSA - Simulated Data for TcGSA
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multtest.TcGSA() - Computing the P-value of the Likelihood Ratios Applying a Multiple Testing Correction
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plot(<TcGSA>) - Plot a Gene Set Trends Heatmap.
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plot1GS() - Plotting a Specific Gene Set
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plotFit.GS() - Plotting function for exploring the fitness of the mixed modeling used in TcGSA
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plotMultipleGS() - Plotting Multiple Gene Sets in a single plot
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plotPat.1GS() - Plotting a Specific Gene Set Stratifying on Patients
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plotPat.TcGSA() - Plot a Gene Set Trends Heatmap for each Patient.
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plotSelect.GS() - Plotting (several) Selected Gene Set(s) in some Subjects
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signifLRT.TcGSA() - Identifying the Significant Gene Sets
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summary(<TcGSA>)print(<summary.TcGSA>) - Summarizing TcGSA